Projects per year
Personal profile
Flemish Discipline list
- Analysis of next-generation sequence data
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Dive into the research topics where Annelies Haegeman is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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METAMINSURV: Exploring practical applications of metabarcoding with MinION to support the surveillance of plant pathogens
Haegeman, A., De Jonghe, K., Slos, D. & Everaert, E.
1/09/22 → 28/02/25
Project: Research
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VIRTAB: Assessing the risk of whitefly transmitted viruses for Belgian crops
De Jonghe, K., Witters, J., Bonte, J., Haegeman, A., Everaert, E., Dermauw, W. & Maertens, F.
1/06/22 → 31/05/24
Project: Research
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FOD SALMINF: Inzicht in het persisterend karakter van Samonella Infantis in de braadkippensector in België als basis voor het doorbreken van contaminatiecycli
Rasschaert, G., Heyndrickx, M., De Reu, K., Haegeman, A., Van der Eycken, M. & Willems, S.
1/02/22 → 31/01/25
Project: Research
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IPMTRIPS: Integrated management of the onion thrips, Thrips tabaci in open field vegetables
Ebrahimi, N., Bonte, J., Witters, J. & Haegeman, A.
1/10/20 → 30/09/24
Project: Research
Research output
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Detection and Identification of Phloem bacteria through MinION Metabarcoding
Everaert, E., De Jonghe, K., Haegeman, A., Slos, D., Heyneman, M. & Foucart, Y., 21-May-2023, (Unpublished). 1 p.Research output: Contribution to conference › Poster
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Exploring genetic diversity in an Ilex crenata breeding germplasm
Geukens, E., Haegeman, A., Van Meulder, J., Van Laere, K., Smolders, E., Ruttink, T. & Leus, L., 13-Apr-2023, In: Horticulturae. 9, 4Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open Access -
Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’
Everaert, E., De Jonghe, K., Slos, D., Heyneman, M. & Haegeman, A., 23-May-2023, In: Phytopathogenic Mollicutes. p. 141-142 2 p.Research output: Contribution to journal › A2: International peer reviewed article (not A1-type) › peer-review
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Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests
Haegeman, A., Foucart, Y., De Jonghe, K., Goedefroit, T., Al Rwahnih, M., Boonham, N., Candresse, T., Gaafar, Y., Hurtado-Gonzales, O., Kogej, Z., Kutnjak, D., Lamovsek, J., Lefebvre, M., Malapi-Wight, M., Mavric-Plesko, I., Onder, S., Reynard, J-S., Pamblanco Salavert, F., Schumpp, O., Stevens, K., & 8 others, 29-May-2023, In: Plants. 12, 11, p. 1-20 20 p., 2139.Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open Access -
Phylogeography and population structure of the global, wide host-range hybrid pathogen Phytophthora × cambivora
Mullett, M. S., Van Poucke, K., Haegeman, A., Focquet, F., Cauldron, N. C., Knaus, B. J., Horta Jung, M., Kageyama, K., Hieno, A., Masuja, H., Uematsu, S., Webber, J. F., Brasier, C. M., Bakonyi, J., Heungens, K., Grünwald, N. J. & Jung, T., 23-Feb-2023, In: IMA fungus. 14, 1, 4.Research output: Contribution to journal › Article › peer-review
Open AccessFile
Datasets
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12S metabarcoding reference data from the Research Institute for Nature and Forest (INBO)
Verschaeve, L. (Contributor), Brys, R. (Contributor), Geeraerts, C. (Contributor), Haegeman, A. (Contributor), Neyrinck, S. (Contributor), Van Breusegem, A. (Contributor), Halfmaerten, D. (Contributor) & Van Liefferinge, N. (Contributor), Zenodo, 30-Mar-2020
DOI: 10.5281/zenodo.3730934, https://zenodo.org/api/records/3730934
Dataset
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Training materials on detection of plant viruses through high throughput sequencing - Accompanying information Kutnjak et al., Microorganisms, 2021,9, 841.
Silva, G. (Contributor), Lefebvre, M. (Contributor), Margaria, P. (Contributor), Haegeman, A. (Contributor), Tamisier, L. (Contributor), Pleško, I. M. (Contributor), Rott, M. (Contributor), Miozzi, L. (Contributor), Schumpp, O. (Contributor), Malapi-Wight, M. (Contributor), Boonham, N. (Contributor), McGreig, S. (Contributor), Chiumenti, M. (Contributor), Remenant, B. (Contributor), Kreuze, J. F. (Contributor), Massart, S. (Contributor), De Jonghe, K. (Contributor), Kutnjak, D. (Contributor), Adams, I. (Contributor), Candresse, T. (Contributor), Rollin, J. (Contributor) & Reynard, J. (Contributor), Zenodo, 28-Mar-2022
DOI: 10.5281/zenodo.6390814, https://zenodo.org/api/records/6390814
Dataset
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Data from: Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation
Van Poucke, K. (Contributor), Haegeman, A. (Contributor), Goedefroit, T. (Contributor), Focquet, F. (Contributor), Leus, L. (Contributor), Horta Jung, M. (Contributor), Junker, C. (Contributor), Redondo, M. (Contributor), Husson, C. (Contributor), Kostov, K. (Contributor), Lyubenova, A. (Contributor), Christova, P. (Contributor), Chandelier, A. (Contributor), Slavov, S. (Contributor), De Cock, A. (Contributor), Bonants, P. (Contributor), Werres, S. (Contributor), Palau, J. (Contributor), Marçais, B. (Contributor), Jung, T. (Contributor), Stenlid, J. (Contributor), Ruttink, T. (Contributor) & Heungens, K. (Contributor), Dryad, 1-Jan-2019
DOI: 10.5061/dryad.p40r314, http://datadryad.org/stash/dataset/doi:10.5061/dryad.p40r314
Dataset
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Supplementary information accompanying the paper "Nematodes facilitate bacterial-mediated biogeochemical processes in marine sediments: a meta-transcriptomics approach"
Guden, R. M. (Contributor), Haegeman, A. (Contributor), Ruttink, T. (Contributor), Moens, T. (Contributor), Derycke, S. (Contributor), Marine Biology Research Group-UGent, B. (Contributor) & Institute For Agricultural And Fisheries Research-Flemish Government, B. (Contributor), VLIZ-Vlaams Instituut voor de Zee, 1-Jan-2022
DOI: 10.14284/575, https://www.vliz.be/en/imis%3Fdasid=8116&doiid=732
Dataset
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Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection
Tamisier, L. (Contributor), Haegeman, A. (Contributor), Foucart, Y. (Contributor), Fouillien, N. (Contributor), Al Rwahnih, M. (Contributor), Buzkan, N. (Contributor), Candresse, T. (Contributor), Chiumenti, M. (Contributor), De Jonghe, K. (Contributor), Lefebvre, M. (Contributor), Margaria, P. (Contributor), Reynard, J. S. (Contributor), Stevens, K. (Contributor), Kutnjak, D. (Contributor) & Massart, S. (Contributor), Dryad, 1-Jan-2021
DOI: 10.5061/dryad.0zpc866z8, http://datadryad.org/stash/dataset/doi:10.5061/dryad.0zpc866z8
Dataset
Activities
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CIOPORA Public Conference on Technical and Legal Aspects of Biotechnology in Ornamentals and Fruits
Annelies Haegeman (Speaker)
26-Apr-2018Activity: Participating in or organising an event › Organisation and participation in conference
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COST-Divas final meeting
Annelies Haegeman (Speaker)
26-Nov-2018 → 28-Nov-2018Activity: Participating in or organising an event › Organisation and participation in conference
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EPPO Workshop on the use of NGS technologies for plant pest diagnostics
Annelies Haegeman (Participation with poster)
22-Nov-2017 → 24-Nov-2017Activity: Participating in or organising an event › Organisation and participation in conference
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Revolutionizing Next-Generation Sequencing (2nd Edition)
Annelies Haegeman (Participation with poster)
20-Mar-2017 → 21-Mar-2017Activity: Participating in or organising an event › Organisation and participation in conference
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Genomics in Agriculture, Fisheries and Food
Annelies Haegeman (Speaker)
21-Apr-2016Activity: Participating in or organising an event › Organisation and participation in conference