Projects per year
Personal profile
Research expertise
Molecular detection and ecology of plant pathogens ; sequencing , assembly and comparative genomics, metagenomics, computational biology, metatranscriptomics, RNA-seq
Education/Academic qualification
Bio-informatics, Advanced Bachelor, HOWEST Brugge
1-Sept-2016 → 28-Jun-2018
BSc Biochemistry
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Dive into the research topics where Steve Baeyen is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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EURL PH BAC 25-27: European Reference Lab Plant Health - on bacteria
Venneman, J. (Researcher), Baeyen, S. (Project Assistant) & De Paepe, B. (Project Assistant)
European Health and Digital Executive Agency
1/01/25 → 31/12/27
Project: Research
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CTRL-PSEUDO: Towards an alternative and well-founded control of Pseudomonas infections in cherry and pear
Cottyn, B. (Project Manager), Venneman, J. (ProjectSupervisor), Baeyen, S. (Project Assistant) & Van Malderghem, C. (Project Assistant)
1/12/22 → 30/11/26
Project: Research
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EXORAL: Preparing for the introduction of exotic strains of the Ralstonia solanacearum species complex (i.e. of Ralstonia pseudosolanacearum and Ralstonia syzygii) – valorisation of culture collections and validation of diagnostics and methods for epidemiosurveillance
Venneman, J. (Project Manager), Van Vaerenbergh, J. (Researcher), Baeyen, S. (Project Assistant) & Slos, D. (Project Assistant)
1/05/24 → 30/04/26
Project: Research
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SOURCETRACK: Source identification of brown rot and ring rot infections in Belgium (1989-2021) by forensic investigation of bacterial genome sequences
Van Vaerenbergh, J. (Project Manager), Venneman, J. (Researcher), Baeyen, S. (Project Assistant) & De Paepe, B. (Project Assistant)
1/03/24 → 31/05/25
Project: Research
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High-quality draft genome sequences of five Xanthomonas arboricola pv. fragariae isolates
Gétaz, M., Baeyen, S., Blom, J., Maes, M., Cottyn, B. & Pothier, J. F., 15-Feb-2018, In: Genome Announcements.Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open Access -
Genetic characterization of strains named as Xanthomonas axonopodis pv. dieffenbachiae leads to a taxonomic revision of the X. axonopodis species complex
Constantin, E., Cleenwerck, I., Maes, M., Baeyen, S., Van Malderghem, C., De Vos, P. & Cottyn, B., 1-May-2016, In: Plant Pathology. 65, p. 792-806 15 p., Doi:10.1111/ppa.12461.Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open Access -
Pathogenicity and virulence gene content of Xanthomonas strains infecting Araceae, formerly known as Xanthomonas axonopodis pv. dieffenbachiae
Constantin, E., Haegeman, A., Van Vaerenbergh, J., Baeyen, S., Van Malderghem, C., Maes, M. & Cottyn, B., 27-Mar-2017, In: Plant Pathology. 16 p., doi:10.1111/ppa.12694.Research output: Contribution to journal › A1: Web of Science-article › peer-review
Open Access -
Isolation and characterization of Pseudomonas syringae pv. porri from leek in Flanders
Rombouts, S., Van Vaerenbergh, J., Volckaert, A., Baeyen, S., De Langhe, T., Declercq, B., Lavigne, R. & Maes, M., 2016, In: European Journal of Plant Pathology. 144, p. 185-198Research output: Contribution to journal › A1: Web of Science-article › peer-review
Datasets
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NCBI BioProject PRJNA1217603 : Sourcetrack data
Baeyen, S. (Creator), NCBI, 31-Jan-2025
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA1217603/
Dataset
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Snakemake workflow for Nanopore-only bacterial genome assembly and QC
Baeyen, S. (Creator), Zenodo, 30-Aug-2024
DOI: 10.5281/zenodo.13597369, https://gitlab.ilvo.be/genomics/wgs/nanopore-only-bacterial-assembly-snakemake
Dataset
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Illumina Phage Assembly & QC Snakemake Pipeline
Baeyen, S. (Creator), Zenodo, 3-Apr-2026
DOI: 10.5281/zenodo.19403801, https://gitlab.ilvo.be/stevebaeyen/phage_assembly_snakemake
Dataset
Activities
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BSc Bio-informatica
Baeyen, S. (Participant)
15-Sept-2016 → 30-Jun-2018Activity: Participating in or organising an event › Participation in workshop, seminar, course
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Metagenomics training VIB-BiTS
Baeyen, S. (Participant)
16-Sept-2016Activity: Participating in or organising an event › Participation in workshop, seminar, course
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VIB-BITS Biopython Training (2016)
Baeyen, S. (Participant)
24-Mar-2016 → 25-Mar-2016Activity: Participating in or organising an event › Participation in workshop, seminar, course
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Python scripting
Baeyen, S. (Participant)
1-Jun-2015 → 3-Jun-2015Activity: Participating in or organising an event › Participation in workshop, seminar, course
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MG-RAST course
Baeyen, S. (Participant)
17-Sept-2014 → 18-Sept-2014Activity: Participating in or organising an event › Participation in workshop, seminar, course