Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’

Ellen Everaert; Kris De Jonghe; Dieter Slos; Maaike Heyneman; Annelies Haegeman

doi:10.5958/2249-4677.2023.00071.3

Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’

Ellen Everaert, Kris De Jonghe, Dieter Slos, Maaike Heyneman, Annelies Haegeman

Plant Sciences

Research output: Contribution to journal › A2: International peer reviewed article (not A1-type) › peer-review

Abstract

Anticipating the huge potential of ONT long read sequencing in plant health diagnostics, the METAMINSURV project will evaluate the feasibility to use MinION metabarcoding as a fast and accurate diagnostic tool for detection and identification of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’.

Original language	English
Journal	Phytopathogenic Mollicutes
Volume	13
Issue number	1
Pages (from-to)	141-142
Number of pages	2
ISSN	2249-4669
DOIs	https://doi.org/10.5958/2249-4677.2023.00071.3
Publication status	Published - 23-May-2023

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10.5958/2249-4677.2023.00071.3

Cite this

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title = "Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria {\textquoteleft}Candidatus Phytoplasma{\textquoteright} and {\textquoteleft}Candidatus Liberibacter{\textquoteright}",

abstract = "Anticipating the huge potential of ONT long read sequencing in plant health diagnostics, the METAMINSURV project will evaluate the feasibility to use MinION metabarcoding as a fast and accurate diagnostic tool for detection and identification of the phloem bacteria {\textquoteleft}Candidatus Phytoplasma{\textquoteright} and {\textquoteleft}Candidatus Liberibacter{\textquoteright}.",

author = "Ellen Everaert and \{De Jonghe\}, Kris and Dieter Slos and Maaike Heyneman and Annelies Haegeman",

year = "2023",

month = may,

day = "23",

doi = "10.5958/2249-4677.2023.00071.3",

language = "English",

volume = "13",

pages = "141--142",

journal = "Phytopathogenic Mollicutes",

issn = "2249-4669",

publisher = "Indian Journals.com",

number = "1",

}

Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’. / Everaert, Ellen ; De Jonghe, Kris ; Slos, Dieter et al.
In: Phytopathogenic Mollicutes, Vol. 13, No. 1, 23.05.2023, p. 141-142.

Research output: Contribution to journal › A2: International peer reviewed article (not A1-type) › peer-review

TY - JOUR

T1 - Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’

AU - Everaert, Ellen

AU - De Jonghe, Kris

AU - Slos, Dieter

AU - Heyneman, Maaike

AU - Haegeman, Annelies

PY - 2023/5/23

Y1 - 2023/5/23

N2 - Anticipating the huge potential of ONT long read sequencing in plant health diagnostics, the METAMINSURV project will evaluate the feasibility to use MinION metabarcoding as a fast and accurate diagnostic tool for detection and identification of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’.

AB - Anticipating the huge potential of ONT long read sequencing in plant health diagnostics, the METAMINSURV project will evaluate the feasibility to use MinION metabarcoding as a fast and accurate diagnostic tool for detection and identification of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’.

UR - https://www.mendeley.com/catalogue/8205edac-31f0-3726-883c-166dd35a5b46/

U2 - 10.5958/2249-4677.2023.00071.3

DO - 10.5958/2249-4677.2023.00071.3

M3 - A2: International peer reviewed article (not A1-type)

SN - 2249-4669

VL - 13

SP - 141

EP - 142

JO - Phytopathogenic Mollicutes

JF - Phytopathogenic Mollicutes

IS - 1

ER -

Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’

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METAMINSURV: Exploring practical applications of metabarcoding with MinION to support the surveillance of plant pathogens

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Exploring practical applications of metabarcoding with MinION to support the surveillance of the phloem bacteria ‘Candidatus Phytoplasma’ and ‘Candidatus Liberibacter’

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METAMINSURV: Exploring practical applications of metabarcoding with MinION to support the surveillance of plant pathogens

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