Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food-borne microorganisms

EFSA BIOHAZ Panel; Lieve Herman

doi:10.2903/j.efsa.2019.5898

Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food-borne microorganisms

EFSA BIOHAZ Panel, Lieve Herman

Technology and Food Science

Research output: Contribution to journal › A2: International peer reviewed article (not A1-type) › peer-review

Original language	English
Journal	EFSA Journal
Volume	17
Issue number	12
Pages (from-to)	5898
Number of pages	78
ISSN	1831-4732
DOIs	https://doi.org/10.2903/j.efsa.2019.5898
Publication status	Published - Dec-2019

Keywords

antimicrobial resistance
food-borne outbreak investigation
metagenomics
microbial risk assessment
source attribution
typing of food-borne pathogens
whole genome sequencing

Access to Document

10.2903/j.efsa.2019.5898

Cite this

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title = "Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food-borne microorganisms",

keywords = "antimicrobial resistance, food-borne outbreak investigation, metagenomics, microbial risk assessment, source attribution, typing of food-borne pathogens, whole genome sequencing",

author = "{EFSA BIOHAZ Panel} and Lieve Herman",

year = "2019",

month = dec,

doi = "10.2903/j.efsa.2019.5898",

language = "English",

volume = "17",

pages = "5898",

journal = "EFSA Journal",

issn = "1831-4732",

publisher = "European Food Safety Authority",

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AU - EFSA BIOHAZ Panel

AU - Herman, Lieve

PY - 2019/12

Y1 - 2019/12

KW - antimicrobial resistance

KW - food-borne outbreak investigation

KW - metagenomics

KW - microbial risk assessment

KW - source attribution

KW - typing of food-borne pathogens

KW - whole genome sequencing

U2 - 10.2903/j.efsa.2019.5898

DO - 10.2903/j.efsa.2019.5898

M3 - A2: International peer reviewed article (not A1-type)

SN - 1831-4732

VL - 17

SP - 5898

JO - EFSA Journal

JF - EFSA Journal

IS - 12

ER -