Advances and perspectives in the application of genomic tools for research and breeding of forage crops

Isabel Roldán-Ruiz; Tom Ruttink; Hilde Muylle; Christophe Verwimp; Elisabeth Veeckman; Gerda Cnops; Tim Vleugels; Philippe Barre

Advances and perspectives in the application of genomic tools for research and breeding of forage crops

Isabel Roldán-Ruiz, Tom Ruttink, Hilde Muylle, Christophe Verwimp, Elisabeth Veeckman, Gerda Cnops, Tim Vleugels, Philippe Barre

Plant

Onderzoeksoutput: Hoofdstuk in Boek/Rapport/Congresprocedure › C1: Artikels in proceedings van wetenschappelijke congressen, die niet inbegrepen zijn in A1, A2, A3 of P1 › peer review

Uittreksel

Next-generation sequencing technologies have offered the possibility to sequence the genome of a few
forage legume and grass species such as red clover or perennial ryegrass for which reference genome
sequences and annotated gene sets are now publicly available. Nevertheless, due to the complexity of the
forage crop genomes and the funding allocated to them, the quality of these reference genomes still needs
improvement to obtain contiguous chromosome-scale assemblies. The latest sequencing technologies
will facilitate the assembly process, and implementation of novel bioinformatics methods can improve
the quality of the genome annotation. With or without the aid of a reference genome sequence, it is
now possible to genotype a large number of individuals or pools of individuals with several thousands of
markers, bringing routine implementation of marker-assisted selection within reach for a large number
of forage crop breeding programmes. Exemplary illustrations are provided in the context of parentage
testing, genome wide association studies, genomic selection and population genetics to identify adaptive
traits.

Oorspronkelijke taal	Engels
Titel	Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses' : Improving sown grasslands through breeding and management
Aantal pagina’s	15
Volume	24
Plaats productie	Wageningen
Publicatiedatum	2019
Pagina's	229-243
ISBN van geprinte versie	978-3_033-07278-7
Publicatiestatus	Gepubliceerd - 2019
Evenement	Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section ‘Fodder Crops and Amenity Grasses’: EGF-Eucarpia 2019 - ETH, Zürich, Zwitserland, Zürich, Zwitserland Duur: 24-jun-2019 → 27-jun-2019 https://egfeucarpia2019.ch/

Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section ‘Fodder Crops and Amenity Grasses’
Tim Vleugels (Spreker)
23-jun-2019 → 27-jun-2019
Activiteit: Deelnemen aan een evenement of er een organiseren › Organisatie en deelname aan een congres

Dit citeren

Roldán-Ruiz, I., Ruttink, T., Muylle, H., Verwimp, C., Veeckman, E., Cnops, G., Vleugels, T., & Barre, P. (2019). Advances and perspectives in the application of genomic tools for research and breeding of forage crops. In Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses': Improving sown grasslands through breeding and management (Vol. 24, blz. 229-243).

Roldán-Ruiz, Isabel ; Ruttink, Tom ; Muylle, Hilde ; Verwimp, Christophe ; Veeckman, Elisabeth ; Cnops, Gerda ; Vleugels, Tim ; Barre, Philippe. / Advances and perspectives in the application of genomic tools for research and breeding of forage crops. Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses': Improving sown grasslands through breeding and management. Vol. 24 Wageningen, 2019. blz. 229-243

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title = "Advances and perspectives in the application of genomic tools for research and breeding of forage crops",

abstract = "Next-generation sequencing technologies have offered the possibility to sequence the genome of a fewforage legume and grass species such as red clover or perennial ryegrass for which reference genomesequences and annotated gene sets are now publicly available. Nevertheless, due to the complexity of theforage crop genomes and the funding allocated to them, the quality of these reference genomes still needsimprovement to obtain contiguous chromosome-scale assemblies. The latest sequencing technologieswill facilitate the assembly process, and implementation of novel bioinformatics methods can improvethe quality of the genome annotation. With or without the aid of a reference genome sequence, it isnow possible to genotype a large number of individuals or pools of individuals with several thousands ofmarkers, bringing routine implementation of marker-assisted selection within reach for a large numberof forage crop breeding programmes. Exemplary illustrations are provided in the context of parentagetesting, genome wide association studies, genomic selection and population genetics to identify adaptivetraits.",

author = "Isabel Rold{\'a}n-Ruiz and Tom Ruttink and Hilde Muylle and Christophe Verwimp and Elisabeth Veeckman and Gerda Cnops and Tim Vleugels and Philippe Barre",

year = "2019",

language = "English",

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pages = "229--243",

booktitle = "Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses'",

note = "Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section {\textquoteleft}Fodder Crops and Amenity Grasses{\textquoteright}, EGF-Eucarpia 2019 ; Conference date: 24-06-2019 Through 27-06-2019",

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Roldán-Ruiz, I , Ruttink, T , Muylle, H, Verwimp, C, Veeckman, E, Cnops, G , Vleugels, T & Barre, P 2019, Advances and perspectives in the application of genomic tools for research and breeding of forage crops. in Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses': Improving sown grasslands through breeding and management. vol. 24, Wageningen, blz. 229-243, Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section ‘Fodder Crops and Amenity Grasses’, Zürich, Zwitserland, 24/06/19.

Advances and perspectives in the application of genomic tools for research and breeding of forage crops. / Roldán-Ruiz, Isabel ; Ruttink, Tom ; Muylle, Hilde; Verwimp, Christophe; Veeckman, Elisabeth; Cnops, Gerda ; Vleugels, Tim; Barre, Philippe.

Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses': Improving sown grasslands through breeding and management. Vol. 24 Wageningen, 2019. blz. 229-243.

Onderzoeksoutput: Hoofdstuk in Boek/Rapport/Congresprocedure › C1: Artikels in proceedings van wetenschappelijke congressen, die niet inbegrepen zijn in A1, A2, A3 of P1 › peer review

TY - CHAP

T1 - Advances and perspectives in the application of genomic tools for research and breeding of forage crops

AU - Roldán-Ruiz, Isabel

AU - Ruttink, Tom

AU - Muylle, Hilde

AU - Verwimp, Christophe

AU - Veeckman, Elisabeth

AU - Cnops, Gerda

AU - Vleugels, Tim

AU - Barre, Philippe

PY - 2019

Y1 - 2019

N2 - Next-generation sequencing technologies have offered the possibility to sequence the genome of a fewforage legume and grass species such as red clover or perennial ryegrass for which reference genomesequences and annotated gene sets are now publicly available. Nevertheless, due to the complexity of theforage crop genomes and the funding allocated to them, the quality of these reference genomes still needsimprovement to obtain contiguous chromosome-scale assemblies. The latest sequencing technologieswill facilitate the assembly process, and implementation of novel bioinformatics methods can improvethe quality of the genome annotation. With or without the aid of a reference genome sequence, it isnow possible to genotype a large number of individuals or pools of individuals with several thousands ofmarkers, bringing routine implementation of marker-assisted selection within reach for a large numberof forage crop breeding programmes. Exemplary illustrations are provided in the context of parentagetesting, genome wide association studies, genomic selection and population genetics to identify adaptivetraits.

AB - Next-generation sequencing technologies have offered the possibility to sequence the genome of a fewforage legume and grass species such as red clover or perennial ryegrass for which reference genomesequences and annotated gene sets are now publicly available. Nevertheless, due to the complexity of theforage crop genomes and the funding allocated to them, the quality of these reference genomes still needsimprovement to obtain contiguous chromosome-scale assemblies. The latest sequencing technologieswill facilitate the assembly process, and implementation of novel bioinformatics methods can improvethe quality of the genome annotation. With or without the aid of a reference genome sequence, it isnow possible to genotype a large number of individuals or pools of individuals with several thousands ofmarkers, bringing routine implementation of marker-assisted selection within reach for a large numberof forage crop breeding programmes. Exemplary illustrations are provided in the context of parentagetesting, genome wide association studies, genomic selection and population genetics to identify adaptivetraits.

M3 - C1: Articles in proceedings

SN - 978-3_033-07278-7

VL - 24

SP - 229

EP - 243

BT - Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses'

CY - Wageningen

T2 - Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section ‘Fodder Crops and Amenity Grasses’

Y2 - 24 June 2019 through 27 June 2019

ER -

Roldán-Ruiz I , Ruttink T , Muylle H, Verwimp C, Veeckman E, Cnops G et al. Advances and perspectives in the application of genomic tools for research and breeding of forage crops. In Proceedings of the Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section 'Fodder Crops and Amenity Grasses': Improving sown grasslands through breeding and management. Vol. 24. Wageningen. 2019. blz. 229-243

Advances and perspectives in the application of genomic tools for research and breeding of forage crops

Uittreksel

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Activiteiten

Joint 20th Symposium of the European Grassland Federation and the 33rd Meeting of the EUCARPIA Section ‘Fodder Crops and Amenity Grasses’

Dit citeren