Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

Joanna Zaluga; Pieter Stragier; Steve Baeyen; Annelies Haegeman; Johan Van Vaerenbergh; Martine Maes; Paul De Vos

doi:10.1186/1471-2164-15-392

Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

Vertaalde titel van de bijdrage: Comparatieve genoomanalyse van pathogene en niet-pathogene Clavibacter stammen toont aanpassingen aan hun levensstijl aan

Joanna Zaluga, Pieter Stragier, Steve Baeyen, Annelies Haegeman, Johan Van Vaerenbergh, Martine Maes, Paul De Vos

Onderzoeksoutput: Bijdrage aan tijdschrift › A1: Web of Science-artikel › peer review

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The genus Clavibacter harbors economically important plant pathogens infecting agricultural
crops such as potato and tomato. Although the vast majority of Clavibacter strains are
pathogenic, there is an increasing number of non-pathogenic isolates reported. Nonpathogenic
Clavibacter strains isolated from tomato seeds are particularly problematic
because they affect the current detection and identification tests for Clavibacter
michiganensis subsp. michiganensis (Cmm), which is regulated with a zero tolerance in
tomato seed. Their misidentification as pathogenic Cmm hampers a clear judgment on the
seed quality and health.

Vertaalde titel van de bijdrage	Comparatieve genoomanalyse van pathogene en niet-pathogene Clavibacter stammen toont aanpassingen aan hun levensstijl aan
Oorspronkelijke taal	Engels
Tijdschrift	BMC Genomics
Volume	15
Pagina's (van-tot)	392
Aantal pagina’s	27
ISSN	1471-2164
DOI's	https://doi.org/10.1186/1471-2164-15-392
Publicatiestatus	Gepubliceerd - 22-mei-2014

Trefwoorden

B110-bioinformatica
genoomsequentie
Genome, Bacterial
B390-fytopathologie

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10.1186/1471-2164-15-392

Clavibacter - BMC Genomics 2014!!Final published version, 233 KB

http://www.biomedcentral.com/1471-2164/15/392

GA-GENOMICS: Diepduiken in de genomische diversiteit van (meta)populaties
Ruttink, T. (Projectverantwoordelijke), Cnops, G. (Onderzoeker), De Campeneere, S. (Onderzoeker), De Loose, M. (Onderzoeker), Debode, J. (Onderzoeker), Goossens, K. (Onderzoeker), Haegeman, A. (Onderzoeker), Muylle, H. (Onderzoeker), Peiren, N. (Onderzoeker), Rasschaert, G. (Onderzoeker), Robbens, J. (Onderzoeker), Roldán-Ruiz, I. (Onderzoeker), Taverniers, I. (Onderzoeker), Van Coillie, E. (Onderzoeker), Vandaele, L. (Onderzoeker), Devriese, L. (Voormalig Onderzoeker), De Mulder, T. (Voormalig doctoraatsstudent), Verwimp, C. (Voormalig doctoraatsstudent), Veeckman, E. (Voormalig Onderzoeker), Maes, M. (Voormalig Onderzoeker), De Tender, C. (Voormalig doctoraatsstudent), Van Glabeke, S. (Voormalig Onderzoeker) & Heyndrickx, M. (Voormalig Onderzoeker)
1/10/13 → 31/08/19
Project: Onderzoek

Dit citeren

@article{b21f335570764245a48de13fdc2c87af,

title = "Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle",

abstract = "The genus Clavibacter harbors economically important plant pathogens infecting agricultural crops such as potato and tomato. Although the vast majority of Clavibacter strains are pathogenic, there is an increasing number of non-pathogenic isolates reported. Nonpathogenic Clavibacter strains isolated from tomato seeds are particularly problematic because they affect the current detection and identification tests for Clavibacter michiganensis subsp. michiganensis (Cmm), which is regulated with a zero tolerance in tomato seed. Their misidentification as pathogenic Cmm hampers a clear judgment on the seed quality and health.",

keywords = "B110-bioinformatics, genoomsequentie, Genome, Bacterial, B390-phytopathology",

author = "Joanna Zaluga and Pieter Stragier and Steve Baeyen and Annelies Haegeman and \{Van Vaerenbergh\}, Johan and Martine Maes and \{De Vos\}, Paul",

year = "2014",

month = may,

day = "22",

doi = "10.1186/1471-2164-15-392",

language = "English",

volume = "15",

pages = "392",

journal = "BMC Genomics",

issn = "1471-2164",

publisher = "BioMed Central",

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TY - JOUR

T1 - Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

AU - Zaluga, Joanna

AU - Stragier, Pieter

AU - Baeyen, Steve

AU - Haegeman, Annelies

AU - Van Vaerenbergh, Johan

AU - Maes, Martine

AU - De Vos, Paul

PY - 2014/5/22

Y1 - 2014/5/22

N2 - The genus Clavibacter harbors economically important plant pathogens infecting agricultural crops such as potato and tomato. Although the vast majority of Clavibacter strains are pathogenic, there is an increasing number of non-pathogenic isolates reported. Nonpathogenic Clavibacter strains isolated from tomato seeds are particularly problematic because they affect the current detection and identification tests for Clavibacter michiganensis subsp. michiganensis (Cmm), which is regulated with a zero tolerance in tomato seed. Their misidentification as pathogenic Cmm hampers a clear judgment on the seed quality and health.

AB - The genus Clavibacter harbors economically important plant pathogens infecting agricultural crops such as potato and tomato. Although the vast majority of Clavibacter strains are pathogenic, there is an increasing number of non-pathogenic isolates reported. Nonpathogenic Clavibacter strains isolated from tomato seeds are particularly problematic because they affect the current detection and identification tests for Clavibacter michiganensis subsp. michiganensis (Cmm), which is regulated with a zero tolerance in tomato seed. Their misidentification as pathogenic Cmm hampers a clear judgment on the seed quality and health.

KW - B110-bioinformatics

KW - genoomsequentie

KW - Genome, Bacterial

KW - B390-phytopathology

U2 - 10.1186/1471-2164-15-392

DO - 10.1186/1471-2164-15-392

M3 - A1: Web of Science-article

SN - 1471-2164

VL - 15

SP - 392

JO - BMC Genomics

JF - BMC Genomics

ER -

Comparative genome analysis of pathogenic and non-pathogenic Clavibacter strains reveals adaptations to their lifestyle

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Trefwoorden

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Projecten

GA-GENOMICS: Diepduiken in de genomische diversiteit van (meta)populaties

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