Gene expression changes in interspecific Festuca x Lolium hybrids

Stepan Stoces; Tom Ruttink; David Kopecky; Michael Abrouk; Jan Bartos; Jaroslav Dolezel

Gene expression changes in interspecific Festuca x Lolium hybrids

Stepan Stoces, Tom Ruttink, David Kopecky, Michael Abrouk, Jan Bartos, Jaroslav Dolezel

Onderzoeksoutput: Bijdrage aan congres › Poster › peer review

Uittreksel

Polyploidy has been recognized a major force in the evolution of flowering plants. Allopolyploidy involves a merge of distant genomes followed by whole-genome duplication. Although recently formed allopolyploids retain duplicated copies of a majority of genes on homoeologous chromosomes, it appears that the contribution of parental genomes doesn’t need to be equal and that altered gene expression is common. Such a divergence is believed to develop in two phases. The first takes place immediately after the hybrid formation, while the second is a gradual evolution of gene expression mediated by diversification of duplicated genes. We have sequenced transcriptomes of two grass species, Festuca pratensis and Lolium multiflorum. The sequences were used to identify species-specific SNPs, which were located in the parental genomes. Developed SNP platform was used to analyze gene expression in newly synthesized Festuca × Lolium hybrids. This provided novel data on genome interactions and silencing of genes belonging to the parental genomes.

Oorspronkelijke taal	Engels
Aantal pagina’s	1
Publicatiestatus	Gepubliceerd - 10-jan.-2015
Evenement	int. Plant Animal Genome Conference, PAG XXIII - San Diego, Verenigde Staten van Amerika Duur: 9-jan.-2015 → 14-jan.-2015 http://intlpag.org/

Congres

Congres	int. Plant Animal Genome Conference, PAG XXIII
Land/Regio	Verenigde Staten van Amerika
Stad	San Diego
Periode	9/01/15 → 14/01/15
Internet adres	http://intlpag.org/

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https://pag.confex.com/pag/xxiii/webprogram/Paper15933.html

GA-GENOMICS: Diepduiken in de genomische diversiteit van (meta)populaties
Ruttink, T. (Projectverantwoordelijke), Cnops, G. (Onderzoeker), De Campeneere, S. (Onderzoeker), De Loose, M. (Onderzoeker), Debode, J. (Onderzoeker), Goossens, K. (Onderzoeker), Haegeman, A. (Onderzoeker), Muylle, H. (Onderzoeker), Peiren, N. (Onderzoeker), Rasschaert, G. (Onderzoeker), Robbens, J. (Onderzoeker), Roldán-Ruiz, I. (Onderzoeker), Taverniers, I. (Onderzoeker), Van Coillie, E. (Onderzoeker), Vandaele, L. (Onderzoeker), Devriese, L. (Voormalig Onderzoeker), De Mulder, T. (Voormalig doctoraatsstudent), Verwimp, C. (Voormalig doctoraatsstudent), Veeckman, E. (Voormalig Onderzoeker), Maes, M. (Voormalig Onderzoeker), De Tender, C. (Voormalig doctoraatsstudent), Van Glabeke, S. (Voormalig Onderzoeker) & Heyndrickx, M. (Voormalig Onderzoeker)
1/10/13 → 31/08/19
Project: Onderzoek

Dit citeren

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title = "Gene expression changes in interspecific Festuca x Lolium hybrids",

abstract = "Polyploidy has been recognized a major force in the evolution of flowering plants. Allopolyploidy involves a merge of distant genomes followed by whole-genome duplication. Although recently formed allopolyploids retain duplicated copies of a majority of genes on homoeologous chromosomes, it appears that the contribution of parental genomes doesn{\textquoteright}t need to be equal and that altered gene expression is common. Such a divergence is believed to develop in two phases. The first takes place immediately after the hybrid formation, while the second is a gradual evolution of gene expression mediated by diversification of duplicated genes. We have sequenced transcriptomes of two grass species, Festuca pratensis and Lolium multiflorum. The sequences were used to identify species-specific SNPs, which were located in the parental genomes. Developed SNP platform was used to analyze gene expression in newly synthesized Festuca × Lolium hybrids. This provided novel data on genome interactions and silencing of genes belonging to the parental genomes.",

author = "Stepan Stoces and Tom Ruttink and David Kopecky and Michael Abrouk and Jan Bartos and Jaroslav Dolezel",

year = "2015",

month = jan,

day = "10",

language = "English",

note = "int. Plant Animal Genome Conference, PAG XXIII ; Conference date: 09-01-2015 Through 14-01-2015",

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TY - CONF

T1 - Gene expression changes in interspecific Festuca x Lolium hybrids

AU - Stoces, Stepan

AU - Ruttink, Tom

AU - Kopecky, David

AU - Abrouk, Michael

AU - Bartos, Jan

AU - Dolezel, Jaroslav

PY - 2015/1/10

Y1 - 2015/1/10

N2 - Polyploidy has been recognized a major force in the evolution of flowering plants. Allopolyploidy involves a merge of distant genomes followed by whole-genome duplication. Although recently formed allopolyploids retain duplicated copies of a majority of genes on homoeologous chromosomes, it appears that the contribution of parental genomes doesn’t need to be equal and that altered gene expression is common. Such a divergence is believed to develop in two phases. The first takes place immediately after the hybrid formation, while the second is a gradual evolution of gene expression mediated by diversification of duplicated genes. We have sequenced transcriptomes of two grass species, Festuca pratensis and Lolium multiflorum. The sequences were used to identify species-specific SNPs, which were located in the parental genomes. Developed SNP platform was used to analyze gene expression in newly synthesized Festuca × Lolium hybrids. This provided novel data on genome interactions and silencing of genes belonging to the parental genomes.

AB - Polyploidy has been recognized a major force in the evolution of flowering plants. Allopolyploidy involves a merge of distant genomes followed by whole-genome duplication. Although recently formed allopolyploids retain duplicated copies of a majority of genes on homoeologous chromosomes, it appears that the contribution of parental genomes doesn’t need to be equal and that altered gene expression is common. Such a divergence is believed to develop in two phases. The first takes place immediately after the hybrid formation, while the second is a gradual evolution of gene expression mediated by diversification of duplicated genes. We have sequenced transcriptomes of two grass species, Festuca pratensis and Lolium multiflorum. The sequences were used to identify species-specific SNPs, which were located in the parental genomes. Developed SNP platform was used to analyze gene expression in newly synthesized Festuca × Lolium hybrids. This provided novel data on genome interactions and silencing of genes belonging to the parental genomes.

M3 - Poster

T2 - int. Plant Animal Genome Conference, PAG XXIII

Y2 - 9 January 2015 through 14 January 2015

ER -

Gene expression changes in interspecific Festuca x Lolium hybrids

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Congres

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Projecten

GA-GENOMICS: Diepduiken in de genomische diversiteit van (meta)populaties

Dit citeren